Description of Research Expertise

microbial ecology; next-generation sequencing; respiratory tract microbiome; ventilator-associated infection; antimicrobial resistance; Clostridium difficile infection

Selected Publications

Yarbrough ML, Dumm RE, Bry L, Kelly BJ, Schwartz D, Uberoi A.: Microbiome-Based Diagnostics for Disease: Where Are We Now and Where Are We Headed? Clin Chem 70 (6): 792-797,2024.

Emilia C. Wilkins, Laura L. Cowden, Anne Jaskowiak-Barr, Lauren Dutcher, Brendan J. Kelly: Stability of gut microbial community composition among donors to a clinical fecal microbiota transplant program American Society for Microbiology (ASM) Microbe 2024 (Atlanta, GA, United States). 14 (1): 155,2024.

Matthew J. Ziegler, Leigh Cressman, Anne Jaskowiak-Barr, Pam Tolomeo, , Brendan J. Kelly: Post-antibiotic risk for recurrent lower respiratory tract infection during prolonged hospitalisation European Congress of Clinical Microbiology and Infectious Diseases (ECCMID) 2024 (Barcelona, Spain). : 2024.

Tanneti NS, Patel AK, Tan LH, Marques AD, Perera RAPM, Sherrill-Mix S, Kelly BJ, Renner DM, Collman RG, Rodino K, Lee C, Bushman FD, Cohen NA, Weiss SR.: Comparison of SARS-CoV-2 variants of concern in primary human nasal cultures demonstrates Delta as most cytopathic and Omicron as fastest replicating mBio 15 (3): e0312923,2024.

Marques AD, Graham-Wooten J, Fitzgerald AS, Sobel Leonard A, Cook EJ, Everett JK, Rodino KG, Moncla LH, Kelly BJ, Collman RG, Bushman FD.: SARS-CoV-2 evolution during prolonged infection in immunocompromised patients mBio 15 (5): e0011024,2024.

Kelly BJ, Kwon JH, Woodworth MH.: Escape Velocity - The Launch of Microbiome Therapies J Infect Dis 230 (1): 2-4,2024.

Ziegler MJ, Anesi J, Tolomeo P, Glaser L, Cowden C, Cressman L, Huang E, Patel A, Lautenbach E, Kelly BJ: Screening and targeted prophylaxis for Clostridioides difficile infection: STOP-CDI. Infectious Diseases Society of America, IDWeek. Oral Presentation; 2024 Oct; Los Angeles, CA. : 2024.

Ziegler MJ, Anesi J, Tolomeo P, Glaser L, Cowden L, Cressman L, Huang E, Patel A, Lautenbach E, Kelly BJ: Screening and Targeted Prophylaxis for Clostridioides difficile Infection: STOP-CDI Submitted and under review. : 2024.

Wilkins EC, Loughrey S, Patel A, Anesi J, Kelly BJ: Metagenomic Profiling Reveals Post-Kidney Transplant Urinary Microbiome Change Submitted and under review. : 2024.

Andy UU, Wilson NG, Bittinger K, Kreines FM, Arya LA, Kelly BJ: Impact of Fecal Microbiota Transplantation on Recipients with High Baseline Gut Bacterial Community Diversity: a Pilot Trial Submitted and under review. : 2024.

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Academic Contact Information

731 Blockley Hall
Philadelphia, PA 19104
Patient appointments: 800-789-7366